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Comparison of PREDITOR and TALOS performance for high-resolution XRAY structures.

Table 4.   30o-accuracy of the full version of PREDITOR, PREDITOR shift-based only predictions and TALOS for the test/training set of 15 high-resolution XRAY structures (resolution < 1.6A).

Ref or BMRB#

Protein Name

PDB

Sheet

φ/ψ30

score

TALOS

φ/ψ30

score

PREDITOR

(shift

only)

φ/ψ30

score

PREDITOR

(full)

TALOS

Time (s)

PREDITOR

Time (s)

4032

Ribonuclease A

1KF3

43.55

0.63

0.83

0.94

1038

28

4364

Stromelysin

1HY7

25.6

0.65

0.78

0.91

1130

37

6391

MMP-12, catalytic domain

1Y93

22.15

0.67

0.81

0.90

1372

38

4661

APAF-1

1CY5

0

0.82

0.80

0.85

720

22

5393

CAP, N-terminal domain

1S0P

1.7

0.78

0.81

0.81

1427

39

6136

L-Arabinose Binding Protein

8ABP

25.57

0.74

0.74

0.98

2285

69

5540

Flavodoxin

1F4P

29.25

0.70

0.73

0.76

1218

33

4472

BeFx-activated CheY

1JBE

22.66

0.70

0.70

0.99

1019

29

4717

FtsZ binding domain of ZipA

1F46

30.71

0.74

0.72

0.85

1161

32

5514

GFPuv

1KYS

55.51

0.47

0.53

0.98

1832

59

6338

At1g77540

1XMT

34.74

0.67

0.60

0.60

860

23

4834

Peptide deformylase

1LM4

34.78

0.65

0.61

0.86

1517

43

5891

Hyperthermophile DNA-binding Protein

1R7J

10

0.83

0.89

0.90

771

20

4831

Hen egg white lysozyme

3LZT

15.5

0.60

0.71

0.86

1029

29

 

 

Average

24.76

0.69

0.73

0.87

1305.04

37.53

 


T - shifts were taken from TALOS database (Cornilescu G, Delaglio F, Bax A. J. Biomol. NMR. 1999; 13: 289-302.) and re-referenced with SHIFTCOR
D - shifts were taken from Chandrasekhar K, Campbell AP, Jeng MF, Holmgren A, Dyson HJ. J. Biomol.NMR.1994; 4: 411-32.

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