>

>

Comparison of SHIFTOR and TALOS performance.

30o-accuracy of the full version of SHIFTOR, SHIFTOR shift-based only predictions and TALOS for the test/training set of 31 proteins.  Note that 11 of the query proteins were a part of the TALOS database. (labeled with "T" in the first column)


Ref or BMRB#

Name

PDB

% β - Sheet

φ/ψ[30]

score

TALOS

φ/ψ[30]

score

SHIFTOR

(shifts only)

φ/ψ[30]

score

SHIFTOR

(full)

TALOS

 Time (s)

SHIFTOR

Time (s)

4101

Cutinase (F.solani)

1CEX

30.40

27.71

67.93

98.37

1405.20

10.99

T

Staphylococcal Nuclease

1SNC

41.70

32.50

67.50

100.00

832.80

8.87

4022

Carbonic Anhydrase I (Human)

1HCB

53.40

19.33

51.26

94.96

1757.40

14.35

T

Cyclophilin A (Human)

2CPL

43.50

22.98

52.17

94.41

1212.00

11.09

547

Calmodulin (Drosophila)

1CLL

12.10

66.13

91.94

91.94

963.00

7.86

T

HIV Protease

1HVRA

69.20

37.36

59.34

80.22

642.00

4.66

4354

D-maltodextrin-binding protein

1DMB

30.10

45.66

63.01

76.59

2599.20

20.86

T

Thiol Ester Dehydrase (E.coli)

1MKAA

53.10

38.46

54.55

96.50

1006.80

10.51

4077

FK506 Binding Protein (Human)

1BKF

57.90

74.77

90.65

91.59

883.20

7.65

T

Alpha-lytic protease

2ALP

57.60

40.22

52.17

97.83

1404.00

9.89

390

Calbindin D9K, minor A form (Pig)

4ICB

13.20

67.65

79.41

79.41

496.20

5.39

T

Cyanovirin-N (N.ellipsosporum)

3EZMA

62.90

43.82

53.93

98.88

619.80

6.56

1061

Interleukin 1beta (Human)

4I1B

76.00

46.40

54.40

90.40

795.00

8.89

T

Phosphocarrier protein III (E.coli)

1F3G

54.70

41.73

48.20

82.73

1035.00

6.44

T

Thioredoxin - Reduced (Human)

1ERT

37.10

81.90

76.19

99.05

788.00

8.78

T

Profilin I (A.castellani)

1ACF

41.10

59.81

65.42

65.42

        NA

       NA

T

Thioredoxin - Reduced (Human)

2TRXA

39.80

71.30

76.85

91.67

        NA

       NA

1657

Ribonuclease H (E.coli)

2RN2

39.40

65.16

67.74

96.77

        NA

       NA

4857

Phosphotransfer Domain of Arcb

2A0B

1.70

86.40

88.00

48.00

        NA

       NA

4072

ColE1 Repressor protein (E.coli)

1ROPA

0.00

96.00

96.00

96.00

        NA

       NA

4084

Nuclear riboprotein A1 (Human)

1L3KA

50.00

59.14

58.06

65.59

        NA

       NA

4401

Troponin C – N domain (Chicken)

1TOP

10.60

81.88

80.00

80.00

        NA

       NA

4562

Lysozyme (Chicken)

3LZM

14.00

78.66

76.22

76.22

        NA

       NA

5211

T Cell Signal Trans. Molecule

1D4TA

51.00

59.38

55.47

74.22

        NA

       NA

4955

IIb Cellobiose (E. coli)

1IIBB

28.20

80.19

75.47

91.51

        NA

       NA

5182

Glur2 ligand binding core (Rat)

1M5EA

36.00

70.72

63.12

95.44

        NA

       NA

4098

Fatty acid binding protein (Rat)

1ICM

62.60

70.23

62.60

98.47

        NA

       NA

4186

Retinoic acid binding protein

1CBS

61.30

75.18

63.50

83.21

        NA

       NA

T

Ubiquitin (Human)

1UBQ

52.80

88.89

76.39

84.72

        NA

       NA

4019

Plastocyanin (Poplar)

1PLC

65.70

72.73

54.55

90.91

        NA

       NA

46, 262, 485

Pancreatic Trypsin Inhibitor (Cow)

5PTI

43.90

70.18

49.12

94.74

        NA

       NA

 

 

Average

41.65

60.40

66.81

87.28

1095.97

9.52



>