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Comparison of PREDITOR and TALOS performance.

Table 4.   30o-accuracy of the full version of PREDITOR, PREDITOR shift-based only predictions and TALOS for the test/training set of 31 proteins. Follow links in the column "φ/ψ30 score PREDITOR (full)" to see PREDITOR results for individual proteins.

Ref or BMRB#

Protein Name (Source)

PDB

Sheet

φ/ψ30

score

TALOS

φ/ψ30

score

Shiftor

(shift

only)

φ/ψ30

score

Shiftor

(full)

TALOS

Time (s)

Shiftor

Time (s)

4101

Cutinase (F.solani)

1CEX_

30.40

27.71

67.93

98.37

1405.20

14.84

T

Staphylococcal Nuclease

1SNC_

41.70

32.50

67.50

100.00

832.80

9.24

4022

Carbonic Anhydrase I (Human)

1HCB_

53.40

19.33

51.26

94.96

1757.40

21.42

T

Cyclophilin A (Human)

2CPL_

43.50

22.98

52.17

94.41

1212.00

12.51

547

Calmodulin (Drosophila)

1CLL_

12.10

66.13

91.94

91.94

963.00

9.50

T

HIV Protease

1HVRA

69.20

37.36

59.34

80.22

642.00

4.05

4354

D-maltodextrin-binding protein

1DMB_

30.10

45.66

63.01

76.59

2599.20

41.66

T

Thiol Ester Dehydrase (E.coli)

1MKAA

53.10

38.46

54.55

96.50

1006.80

11.25

4077

FK506 Binding Protein (Human)

1BKF_

57.90

74.77

90.65

91.59

883.20

8.02

T

Alpha-lytic protease

2ALP_

57.60

40.22

52.17

97.83

1404.00

13.67

390

Calbindin D9K, minor A form (Pig)

4ICB_

13.20

67.65

79.41

79.41

496.20

4.86

T

Cyanovirin-N (N.ellipsosporum)

3EZMA

62.90

43.82

53.93

98.88

619.80

6.57

1061

Interleukin 1beta (Human)

4I1B_

76.00

46.40

54.40

90.40

795.00

9.71

T

Phosphocarrier protein III (E.coli)

1F3G_

54.70

41.73

48.20

82.73

1035.00

8.45

T

Thioredoxin - Reduced (Human)

1ERT

37.10

81.90

76.19

99.05

788.00

7.96

T

Profilin I (A.castellani)

1ACF_

41.10

59.81

65.42

65.42

709.80

8.46

D

Thioredoxin - Reduced (Human)

2TRXA

39.80

71.30

76.85

91.67

808.80

8.43

1657

Ribonuclease H (E.coli)

2RN2_

39.40

65.16

67.74

96.77

1279.20

12.85

4857

Histidine-containing Phosphotransfer Domain of Arcb

2A0B_

1.70

86.40

88.00

93.60

967.80

3.92

4072

ColE1 Repressor protein (E.coli)

1ROPA

0.00

96.00

96.00

96.00

381.00

3.80

4084

Nuclear riboprotein A1 (Human)

1L3KA

50.00

59.14

58.06

65.59

600.00

7.05

4401

Troponin C – N domain (Chicken)

1TOP_

10.60

81.88

80.00

80.00

1213.80

12.44

4562

Lysozyme (Chicken)

3LZM_

14.00

78.66

76.22

76.22

1293.00

13.08

5211

T Cell Signal Trans. Molecule

1D4TA

51.00

59.38

55.47

74.22

912.00

9.62

4955

IIb Cellobiose (E. coli)

1IIBB

28.20

80.19

75.47

91.51

819.00

7.86

5182

Glur2 ligand binding core (Rat)

1M5EA

36.00

70.72

63.12

95.44

1942.00

23.03

4098

Fatty acid binding protein (Rat)

1ICM_

62.60

70.23

62.60

98.47

954.00

9.91

4186

Retinoic acid binding protein

1CBS_

61.30

75.18

63.50

83.21

1857.00

10.38

T

Ubiquitin (Human)

1UBQ_

52.80

88.89

76.39

84.72

571.80

7.42

4019

Plastocyanin (Poplar)

1PLC_

65.70

72.73

54.55

90.91

953.20

9.91

46, 262, 485

Pancreatic Trypsin Inhibitor (Cow)

5PTI_

43.90

70.18

49.12

94.74

456.00

4.31

 

 

Average

41.65

60.40

66.81

89.44

1037.32

11.02

 


T - shifts were taken from TALOS database (Cornilescu G, Delaglio F, Bax A. J. Biomol. NMR. 1999; 13: 289-302.) and re-referenced with SHIFTCOR
D - shifts were taken from Chandrasekhar K, Campbell AP, Jeng MF, Holmgren A, Dyson HJ. J. Biomol.NMR.1994; 4: 411-32.

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